21255 SYLFThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21255	chr_2	SYLF	886250	887488	+	SYLF

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450243	Thaps21255.3, Thaps21255.2, Thaps21255.1, Thaps21255.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0101

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0175	0.42	0.0000028 4700

Most Highly Correlated Transcripts

26991 GRX_GRXh_1_2_like 0.9296	20405 GRX_GRXh_1_2_like 0.9103	264157 CBS_pair superfamily 0.9103	36649 SufE superfamily 0.893	9776 hypothetical protein 0.8888	5470 CBS_pair superfamily 0.8882
17214 PLN02512 0.8828	7516 Aldo_ket_red 0.878	22171 hypothetical protein 0.8774	6942 DUF89 0.8759

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SYLF		The SYLF domain (also called DUF500), a novel lipid-binding module; The SYLF domain is named after...	cl01109	195.117	9.69E-62	12 - 208	specific	211400
SYLF superfamily		The SYLF domain (also called DUF500), a novel lipid-binding module; The SYLF domain is named after...	-	195.117	9.69E-62	12 - 208	superfamily	260792

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	441326	Not available	Not available	354294

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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