Thaps_bicluster_0175 Residual: 0.42
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0175 0.42 Thalassiosira pseudonana
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Displaying 1 - 35 of 35
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20944 Glyco_tranf_GTA_type superfamily

20944 - Glyco_tranf_GTA_type superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

20944
21074 hypothetical protein

21074 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21074
21109 DAGK_cat

21109 - DAGK_cat

GO Terms:

GO:0004143, GO:0007205, GO:0008481

CD Domains:

Go To Gene Page:

21109
21255 SYLF

21255 - SYLF

GO Terms:

NA

CD Domains:

Go To Gene Page:

21255
21444 hypothetical protein

21444 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21444
24644 hypothetical protein

24644 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24644
2516 hypothetical protein

2516 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2516
261589 S49_Sppa_N_C

261589 - S49_Sppa_N_C

GO Terms:

GO:0006508, GO:0008233, GO:0004252, GO:0004289, GO:0008132, GO:0008243, GO:0008991, GO:0016808

CD Domains:

Go To Gene Page:

261589
270302 hypothetical protein

270302 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

270302
2792 hypothetical protein

2792 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2792
2816 hypothetical protein

2816 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2816
34042 Abhydrolase_6

34042 - Abhydrolase_6

GO Terms:

GO:0003824, GO:0006725, GO:0016787, GO:0047372

CD Domains:

Go To Gene Page:

34042
34077 ISN1 superfamily

34077 - ISN1 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

34077
36502 IF4E

36502 - IF4E

GO Terms:

GO:0003723, GO:0003743, GO:0005737, GO:0006413

CD Domains:

Go To Gene Page:

36502
37791 LanC_like superfamily

37791 - LanC_like superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

37791
38632 Esterase_lipase superfamily

38632 - Esterase_lipase superfamily

GO Terms:

GO:0003824

CD Domains:

Go To Gene Page:

38632
3933 hypothetical protein

3933 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3933
3966 PT_UbiA superfamily

3966 - PT_UbiA superfamily

GO Terms:

GO:0004659, GO:0016021

CD Domains:

Go To Gene Page:

3966
4512 hypothetical protein

4512 - hypothetical protein

GO Terms:

GO:0003824

CD Domains:

Go To Gene Page:

4512
4650 hypothetical protein

4650 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4650
5182 hypothetical protein

5182 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5182
5977 hypothetical protein

5977 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5977
6089 hypothetical protein

6089 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6089
6373 hypothetical protein

6373 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6373
6452 hypothetical protein

6452 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6452
6468 hypothetical protein

6468 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6468
6585 MATH

6585 - MATH

GO Terms:

GO:0005515, GO:0003677

CD Domains:

Go To Gene Page:

6585
7085 PI-PLCc_GDPD_SF superfamily

7085 - PI-PLCc_GDPD_SF superfamily

GO Terms:

GO:0004629, GO:0007165, GO:0007242

CD Domains:

Go To Gene Page:

7085
7926 hypothetical protein

7926 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7926
8369 hypothetical protein

8369 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8369
8718 hypothetical protein

8718 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8718
8737 hypothetical protein

8737 - hypothetical protein

GO Terms:

GO:0006457

CD Domains:

Go To Gene Page:

8737
9186 hypothetical protein

9186 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9186
9339 hypothetical protein

9339 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9339
9419 hypothetical protein

9419 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9419
GO ID Go Term p-value q-value Cluster
GO:0007205 protein kinase C activation 0.00433615 1 Thaps_bicluster_0175
GO:0006725 aromatic compound metabolism 0.031426 1 Thaps_bicluster_0175
GO:0006413 translational initiation 0.0342405 1 Thaps_bicluster_0175
GO:0007165 signal transduction 0.0565048 1 Thaps_bicluster_0175
GO:0007242 intracellular signaling cascade 0.0592567 1 Thaps_bicluster_0175
GO:0006457 protein folding 0.173725 1 Thaps_bicluster_0175
GO:0006508 proteolysis and peptidolysis 0.349482 1 Thaps_bicluster_0175
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