21682 SrmB
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
21682 chr_3 SrmB 608272 610895 - SrmB
NCBI ID Ensembl Genomes exon ID
7444706 Thaps21682.2, Thaps21682.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221
Normalized Mean Residue
Thaps_bicluster_0193
0.22
hypothetical protein
0.9421
SRP40_C superfamily
0.9357
(bd1945) NA
0.935
TPR
0.93
(GPB1) WD40
0.9299
hypothetical protein
0.9291
hypothetical protein
0.9286
COG5593
0.9272
hypothetical protein
0.9255
(RPA1) RNAP_I_RPA1_N
0.9231
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEAD DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. Helicases... cl17251 84.992 7.48E-19 324 - 552 specific 249732
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 84.992 7.48E-19 324 - 552 superfamily 266587
SAP SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... cl02640 59.318 3.85E-11 58 - 92 specific 251054
SAP superfamily SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... - 59.318 3.85E-11 58 - 92 superfamily 261387
SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription /... - 94.0865 2.66E-20 321 - 779 multi-dom 223587
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
13378 Not available 144879 224787 470341 Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0005524 GO:0008026 GO:0003676 GO:0004386 GO:0003677 GO:0000810 GO:0004787 GO:0008722 GO:0008758 GO:0008796 GO:0008828 GO:0016462 GO:0016818 GO:0019176 GO:0019177 -

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

diacylglycerol diphosphate phosphatase activity

Details: 
Catalysis of the reaction: a 1,2-diacyl-sn-glycerol 3-diphosphate + H2O = a 1,2-diacyl-sn-glycerol 3-phosphate + phosphate.
GO Category: 
MF

thiamine-pyrophosphatase activity

Details: 
Catalysis of the reaction: TDP + H2O = TMP + phosphate.
GO Category: 
MF

NA

Details: 
NA
GO Category: 
NA

UDP-2,3-diacylglucosamine hydrolase activity

Details: 
Catalysis of the reaction: H2O + UDP-2,3-bis(3-hydroxymyristoyl)glucosamine = 2,3-bis(3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP.
GO Category: 
MF

bis(5'-nucleosyl)-tetraphosphatase activity

Details: 
Catalysis of the hydrolysis of P(1),P(4)-bis(5'-nucleosyl)tetraphosphate into two nucleotides.
GO Category: 
MF

dATP pyrophosphohydrolase activity

Details: 
Catalysis of the reaction: deoxy-ATP + H2O = dAMP + diphosphate.
GO Category: 
MF

pyrophosphatase activity

Details: 
Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments.
GO Category: 
MF

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Details: 
Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.
GO Category: 
MF

dihydroneopterin monophosphate phosphatase activity

Details: 
Catalysis of the reaction: dihydroneopterin monophosphate = dihydroneopterin + phosphate.
GO Category: 
MF

dihydroneopterin triphosphate pyrophosphohydrolase activity

Details: 
Catalysis of the reaction: dihydroneopterin triphosphate = dihydroneopterin phosphate + diphosphate.
GO Category: 
MF
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