22140 UFD1 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22140 chr_4 UFD1 superfamily 483155 484235 - UFD1 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452514 Thaps22140.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0028

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0183
 0.30

Most Highly Correlated Transcripts

270222

0.9485

21250

hypothetical protein
0.9352

31829

CBS_like
0.9293

268592

VDE superfamily
0.9241

270338

hypothetical protein
0.9144

270261

hypothetical protein
0.9129

2577

hypothetical protein
0.9094

bd1645

(bd1645) tpt
0.9078

bd208

(bd208) DUF3529
0.9058

270221

hypothetical protein
0.9041

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UFD1 superfamily Ubiquitin fusion degradation protein UFD1; Post-translational ubiquitin-protein conjugates are... - 114.578 1.47E-30 130 - 308 superfamily 251761

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15795 PHATRDRAFT_15795 217419 166840 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006511 -

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

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