268592 VDE superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268592	chr_4	VDE superfamily	142156	143207	+	VDE superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Thaps268592.1, Thaps268592.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0016

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0142	0.24	0.000012 0.00005

Most Highly Correlated Transcripts

22076 violaxanthin de-epoxidase-like 1 0.9996	3853 DUF3493 0.956	21250 hypothetical protein 0.9542	7191 Aldo_ket_red 0.9511	bd718 (bd718) PRK10387 0.9484	6988 PTZ00401 0.9476
574 PRK05444 0.9461	4465 hypothetical protein 0.9454	268773 Gst 0.9453	4331 Aldolase_Class_I superfamily 0.9436

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
VDE superfamily		Violaxanthin de-epoxidase (VDE); This family represents a conserved region approximately 150...	-	133.043	2.15E-35	8 - 259	superfamily	262831

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_36048	PHATRDRAFT_36048	271689	Not available	434525	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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