22978 Aar2_CThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22978	chr_6	Aar2_C	313312	315107	+	Aar2_C

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448401	Thaps22978.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0302

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0229	0.40	120 270

Most Highly Correlated Transcripts

bd1877 (bd1877) NA 0.9114	7335 hypothetical protein 0.8707	269586 hypothetical protein 0.853	7336 hypothetical protein 0.8459	bd1692 (bd1692) NA 0.8434	7334 hypothetical protein 0.8323
25102 hypothetical protein 0.8133	262677 0.8099	269976 SRPBCC superfamily 0.8097	4071 hypothetical protein 0.8054

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Aar2_C superfamily		C-terminal domain of Aar2, a U5 small nuclear ribonucleoprotein particle assembly factor; This...	-	99.6771	2.14E-24	289 - 441	superfamily	260100
Aar2_C superfamily		C-terminal domain of Aar2, a U5 small nuclear ribonucleoprotein particle assembly factor; This...	-	99.6771	2.14E-24	289 - 441	superfamily	260100

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	254653	288547	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments