23142 Aa_trans superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23142 chr_6 Aa_trans superfamily 1113021 1115148 + Aa_trans superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445982 Thaps23142.1, Thaps23142.3, Thaps23142.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0288

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0132
 0.41

Most Highly Correlated Transcripts

bd466

(bd466) cytochrome_b_C
0.9427

bd1304

(bd1304) Ycf4
0.9405

bd1720

(bd1720) ftsH
0.9401

bd1652

(bd1652) ABC_ATPase superfamily
0.9389

bd467

(bd467) Cytochrome_b_N
0.9382

bd1403

(bd1403) NA
0.9305

bd2088

(bd2088) rbcL
0.93

bd1318

(bd1318) atpF
0.9251

bd1378

(bd1378) atpI
0.9245

bd1387

(bd1387) psbE
0.9241

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Aa_trans superfamily Transmembrane amino acid transporter protein; This transmembrane region is found in many amino acid... - 85.8125 2.27E-18 66 - 436 superfamily 266708

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 137398 Not available 457359 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005279 GO:0006865 GO:0016020 -

GO:0005279

NA

Details: 
NA
GO Category: 
NA

GO:0006865

amino acid transport

Details: 
The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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