23199 WD40 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23199	chr_6	WD40 superfamily	1345368	1350692	-	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442720	Thaps23199.2, Thaps23199.3, Thaps23199.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0243

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0079	0.38	0.0017 0.0000015

Most Highly Correlated Transcripts

263650 NAD_binding_8 superfamily 0.9042	28816 (RPC1) PRK08566 0.8985	264090 AAA_12 0.8967	268352 P-ATPase-V 0.8917	25640 hypothetical protein 0.8892	22296 hypothetical protein 0.8874
20682 hypothetical protein 0.8827	24231 C2 superfamily 0.8814	21802 hypothetical protein 0.881	10533 hypothetical protein 0.8756

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	78.1456	1.40E-15	365 - 548	superfamily	238121

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_42932	PHATRDRAFT_42932	234484	324884	Not available	Not available	AT4G01860.2	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003677 GO:0005677 GO:0006342 GO:0006355 -

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