28816 (RPC1) PRK08566
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
28816 chr_6 (RPC1) PRK08566 1840990 1845791 + PRK08566

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0273

Most Highly Correlated Transcripts

24314

hypothetical protein
0.9111

22296

hypothetical protein
0.8992

23199

WD40 superfamily
0.8985

20682

hypothetical protein
0.895

24231

C2 superfamily
0.8934

8366

hypothetical protein
0.8868

21190

SAC3_GANP
0.8866

23966

hypothetical protein
0.8813

14890

Cupin_8 superfamily
0.8802

25023

Sec15 superfamily
0.8774

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNAP_III_RPC1_N Largest subunit (RPC1) of eukaryotic RNA polymerase III (RNAP III), N-terminal domain; Rpc1 (C160)... cl19114 1527.48 0 46 - 914 specific 259847
RNAP_largest_subunit_N superfamily Largest subunit of RNA polymerase (RNAP), N-terminal domain; This region represents the N-terminal... - 1527.48 0 46 - 914 superfamily 267467
RNAP_III_Rpc1_C Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain; Eukaryotic... cl11429 487.496 2.08E-160 1044 - 1394 specific 132723
RNAP_largest_subunit_C superfamily Largest subunit of RNA polymerase (RNAP), C-terminal domain; RNA polymerase (RNAP) is a large multi... - 487.496 2.08E-160 1044 - 1394 superfamily 142634
PRK08566 DNA-directed RNA polymerase subunit A'; Validated - 937.739 0 33 - 947 multi-dom 236292
RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 407.834 1.59E-128 864 - 1352 multi-dom 147266

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 226013 319821 458392 Cre16.g680900.t1.2 AT4G35800.1 330794

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003677 GO:0003899 GO:0005634 GO:0006350 GO:0003900 GO:0003901 GO:0003902 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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