23215 Ubox
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23215 chr_6 Ubox 1443857 1446428 - Ubox

Synonyms

NCBI ID Ensembl Genomes exon ID
7453304 Thaps23215.2, Thaps23215.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0486

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0154
 0.36

Most Highly Correlated Transcripts

bd739

(bd739) NA
0.9102

bd1802

(bd1802) NA
0.9087

25430

hypothetical protein
0.8597

bd1891

(bd1891) COG3899
0.8581

bd1749

(bd1749) NA
0.8554

25553

hypothetical protein
0.8429

25591

hypothetical protein
0.8423

bd1813

(bd1813) NA
0.8324

bd738

(bd738) NA
0.8311

262535

NrfG
0.8286

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play... cl02542 69.8817 8.75E-15 15 - 72 specific 99751
DnaJ superfamily DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play... - 69.8817 8.75E-15 15 - 72 superfamily 261333
Ubox Modified RING finger domain; Modified RING finger domain, without the full complement of Zn2+-... cl17544 81.5125 6.68E-19 381 - 440 specific 128780
U-box superfamily U-box domain; This domain is related to the Ring finger pfam00097 but lacks the zinc binding... - 81.5125 6.68E-19 381 - 440 superfamily 266741

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 453113 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006457 GO:0031072 GO:0051082 GO:0000151 GO:0004842 GO:0016567 -

GO:0006457

protein folding

Details: 
The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
GO Category: 
BP

GO:0031072

heat shock protein binding

Details: 
Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock.
GO Category: 
MF

GO:0051082

unfolded protein binding

Details: 
Interacting selectively and non-covalently with an unfolded protein.
GO Category: 
MF

GO:0000151

ubiquitin ligase complex

Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.
GO Category: 
CC

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0016567

protein ubiquitination

Details: 
The process in which one or more ubiquitin groups are added to a protein.
GO Category: 
BP

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