23337 RRP7_Rrp7pThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23337	chr_7	RRP7_Rrp7p	127450	129572	-	RRP7_Rrp7p

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446595	Thaps23337.5, Thaps23337.3, Thaps23337.1, Thaps23337.2, Thaps23337.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0219

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0265	0.39	0.0021 16000

Most Highly Correlated Transcripts

bd1667 (bd1667) Mpp10 0.9265	bd1709 (bd1709) NA 0.9217	268543 hypothetical protein 0.9073	bd96 (bd96) eIF-3_zeta 0.9042	25120 U3_assoc_6 superfamily 0.8984	29018 NMD3 0.8948
34027 SrmB 0.8923	39075 PRK09246 0.891	269776 Ribosomal_L1 0.8904	18198 RRM_NIFK_like 0.8901

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRP7_Rrp7p		RRP7 domain ribosomal RNA-processing protein 7 (Rrp7p) and similar proteins; This CD corresponds to...	cl15166	139.721	4.77E-39	467 - 610	specific	240577
RRP7_like superfamily		RRP7 domain ribosomal RNA-processing protein 7 (Rrp7p), ribosomal RNA-processing protein 7 homolog...	-	139.721	4.77E-39	467 - 610	superfamily	265615

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_49450	PHATRDRAFT_49450	276509	283583	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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