23416 SCP superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23416 chr_7 SCP superfamily 649640 651929 + SCP superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449006 Thaps23416.3, Thaps23416.2, Thaps23416.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0391

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0014
 0.46

Most Highly Correlated Transcripts

23624

SCP superfamily
0.8781

28410

PldB
0.8622

21795

SCP superfamily
0.8346

21477

hypothetical protein
0.8329

21695

hypothetical protein
0.8303

23509

hypothetical protein
0.8232

263599

COG3899
0.8224

261357

NAD_binding_8 superfamily
0.8206

263610

COG3899
0.8197

21068

hypothetical protein
0.8193

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SCP superfamily SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family... - 68.3907 1.16E-13 470 - 609 superfamily 260208

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005576 -

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

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