24042 cytidine_deaminase-like superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24042	chr_9	cytidine_deaminase-like superfamily	858001	861012	+	cytidine_deaminase-like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448107	Thaps24042.2, Thaps24042.8, Thaps24042.4, Thaps24042.5, Thaps24042.7, Thaps24042.6, Thaps24042.3, Thaps24042.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0041

Most Highly Correlated Transcripts

ThpsCp096 (rpl4) ribosomal protein L4 0.8753	264556 FBPase 0.8752	12899 AAA 0.87	267979 HCO3_cotransp superfamily 0.8642	25640 hypothetical protein 0.8604	ThpsCp134 (rpl34) ribosomal protein L34 0.8536
25214 PRK02224 0.8534	ThpsCp110 (rpl6) ribosomal protein L6 0.8519	41403 ABCC_MRP_domain2 0.8504	23769 hypothetical protein 0.8488

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
cytidine_deaminase-like superfamily		Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases...	-	93.0859	7.32E-22	181 - 342	superfamily	260314

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46623	PHATRDRAFT_46623	272076	239311	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0008270 GO:0016787 -

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