24323 RNase_PH superfamily
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
24323 chr_11a RNase_PH superfamily 320916 322241 - RNase_PH superfamily
NCBI ID Ensembl Genomes exon ID
7443290 Thaps24323.2, Thaps24323.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230
Normalized Mean Residue
Thaps_bicluster_0079
0.38
hypothetical protein
0.8929
PLN02948
0.891
Ofd1_CTDD
0.8896
hypothetical protein
0.8876
hypothetical protein
0.8839
Fcf2
0.8836
(bd1806) AAT_I superfamily
0.8828
DUF947
0.8822
G-patch
0.88
hypothetical protein
0.8798
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNase_PH superfamily RNase PH-like 3'-5' exoribonucleases; RNase PH-like 3'-5'... - 140 1.04E-38 34 - 370 superfamily 261591
PRK04282 exosome complex RNA-binding protein Rrp42; Provisional - 111.507 2.67E-28 39 - 366 multi-dom 235268
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 244526 Not available Not available Not available AT1G60080.1 529521
KEGG description KEGG Pathway
RNA degradation map03018
GO:0000175 GO:0003723 GO:0006396 GO:0004534 GO:0016896 -

3'-5'-exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.
GO Category: 
MF

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

5'-3' exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of an RNA molecule.
GO Category: 
MF

exoribonuclease activity, producing 5'-phosphomonoesters

Details: 
Catalysis of the hydrolysis of ester linkages within ribonucleic acids by removing nucleotide residues from the 3' or 5' end to yield 5' phosphomonoesters.
GO Category: 
MF
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