24704 COG3899Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24704	chr_13	COG3899	784120	788930	+	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450497	Thaps24704.2, Thaps24704.1, Thaps24704.6, Thaps24704.4, Thaps24704.3, Thaps24704.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0417

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0189	0.32	0.44 280

Most Highly Correlated Transcripts

bd415 (bd415) arom_aa_hydroxylase superfamily 0.9359	21133 COG3899 0.9122	22721 hypothetical protein 0.9112	bd1841 (bd1841) CAP10 superfamily 0.9107	262517 Glyco_18 0.8863	21645 hypothetical protein 0.8818
23441 Patatin_and_cPLA2 superfamily 0.8796	2711 hypothetical protein 0.8791	3375 (Tp_Myb2R2) regulator [Rayko] 0.8756	25330 hypothetical protein 0.8729

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COG3899		Predicted ATPase [General function prediction only]	-	201.473	2.60E-53	416 - 1109	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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