21133 COG3899Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21133	chr_2	COG3899	292798	297142	+	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452194	Thaps21133.1, Thaps21133.2, Thaps21133.7, Thaps21133.6, Thaps21133.4, Thaps21133.3, Thaps21133.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0423

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0073	0.47	0.000041 8.2

Most Highly Correlated Transcripts

3375 (Tp_Myb2R2) regulator [Rayko] 0.9168	24704 COG3899 0.9122	bd721 (bd721) NA 0.9056	25198 HA 0.9054	21220 KU superfamily 0.8949	24029 hypothetical protein 0.8908
21410 hypothetical protein 0.8896	23754 hypothetical protein 0.8868	24685 Glyco_tranf_GTA_type superfamily 0.8857	20674 WD40 superfamily 0.8792

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	82.5105	8.74E-18	245 - 472	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	82.5105	8.74E-18	245 - 472	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	288.142	3.33E-82	246 - 1143	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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