25677 MgtE superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25677 chr_20 MgtE superfamily 762623 764652 - MgtE superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447789 Thaps25677.3, Thaps25677.2, Thaps25677.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0175

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0289
 0.38

Most Highly Correlated Transcripts

bd624

(bd624) Glyco_transf_34 superfamily
0.9206

263994

Adaptin_N
0.9084

43150

PolyPPase_VTC4_like
0.9004

1820

SET
0.895

24285

hypothetical protein
0.8918

263997

(APA1) Adaptin_N
0.8911

bd392

(bd392) DEXDc
0.8907

bd1765

(bd1765) NA
0.8864

16295

FBPase
0.8855

264556

FBPase
0.8841

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MgtE superfamily Divalent cation transporter; This region is the integral membrane part of the eubacterial MgtE... - 70.4357 1.54E-14 346 - 469 superfamily 242091

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42927 PHATRDRAFT_42927 181343 297807 225355 Cre12.g483900.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006812 GO:0008324 GO:0003824 -

GO:0006812

cation transport

Details: 
The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0008324

cation transmembrane transporter activity

Details: 
Catalysis of the transfer of cation from one side of the membrane to the other.
GO Category: 
MF

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

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