261093 S49_Sppa_N_C
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261093 chr_1 S49_Sppa_N_C 2343753 2345647 + S49_Sppa_N_C

Synonyms

NCBI ID Ensembl Genomes exon ID
7447619 Thaps261093.2, Thaps261093.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0233

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0291
 0.48

Most Highly Correlated Transcripts

36007

Aldolase_II superfamily
0.9057

9247

hypothetical protein
0.8982

35136

NA
0.8765

35541

Cis_IPPS
0.8705

37497

cysE
0.8692

36525

PRK09427
0.86

11868

hypothetical protein
0.8535

268443

SAICAR_synt_Sc
0.8531

260874

PI3Kc_like superfamily
0.851

3959

KPHMT-like
0.8481

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Signal peptide... cl15763 161.501 8.00E-46 417 - 592 specific 132934
Clp_protease_like superfamily Caseinolytic protease (ClpP) is an ATP-dependent protease; Clp protease (caseinolytic protease;... - 161.501 8.00E-46 417 - 592 superfamily 265774

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_5396 PHATR_5396 152639 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008462 GO:0008233 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008462

NA

Details: 
NA
GO Category: 
NA

GO:0008233

peptidase activity

Details: 
Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
GO Category: 
MF

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