261232 URO-D
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261232 chr_2 URO-D 347327 348844 + URO-D

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps261232.1, Thaps261232.3, Thaps261232.2, Thaps261232.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0024

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0208
 0.25

Most Highly Correlated Transcripts

270346

hypothetical protein
1

719

PLN02433
0.9608

9021

(PbgD) hemC
0.9536

10233

COG1233
0.952

5240

ALAD_PBGS_aspartate_rich
0.9503

575

PRK00062
0.9483

2356

hypothetical protein
0.9458

4700

hypothetical protein
0.9454

32723

Chloroa_b-bind
0.9415

4718

SDR_a5
0.9401

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four... cl00464 455.449 7.89E-160 43 - 376 specific 238368
URO-D_CIMS_like superfamily The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen... - 455.449 7.89E-160 43 - 376 superfamily 260440

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19188 PHATRDRAFT_19188 270185 189823 361296 Cre11.g467700.t1.1 AT2G40490.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004853 GO:0006779 -

GO:0004853

uroporphyrinogen decarboxylase activity

Details: 
Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2.
GO Category: 
MF

GO:0006779

porphyrin-containing compound biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
GO Category: 
BP

Add comment

Log in to post comments