719 PLN02433
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
719 chr_12 PLN02433 902949 904320 - PLN02433

Synonyms

NCBI ID Ensembl Genomes exon ID
7448015 Thaps719.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0024

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0118
 0.28

Most Highly Correlated Transcripts

32201

Cob-chelat-sub
0.9625

575

PRK00062
0.9614

261232

URO-D
0.9608

5240

ALAD_PBGS_aspartate_rich
0.9535

5077

PLN00015
0.9406

262279

PT_UbiA_chlorophyll
0.9387

261608

PLN02585
0.9377

5632

hypothetical protein
0.9344

32723

Chloroa_b-bind
0.9319

8063

SDR_c
0.9313

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN02433 uroporphyrinogen decarboxylase cl00464 497.929 3.55E-175 93 - 455 specific 215237
URO-D_CIMS_like superfamily The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen... - 497.929 3.55E-175 93 - 455 superfamily 260440

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16140 PHATRDRAFT_16140 180564 188134 435069 Not available Not available 354807

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004853 GO:0006779 -

GO:0004853

uroporphyrinogen decarboxylase activity

Details: 
Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2.
GO Category: 
MF

GO:0006779

porphyrin-containing compound biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
GO Category: 
BP

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