261589 S49_Sppa_N_C
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261589 chr_2 S49_Sppa_N_C 2370187 2372608 + S49_Sppa_N_C

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0399

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0175
 0.42

Most Highly Correlated Transcripts

20944

Glyco_tranf_GTA_type superfamily
0.9225

9174

DUF563
0.9032

23517

PRK13759
0.9014

32139

hypothetical protein
0.8986

21986

hypothetical protein
0.8943

39767

TLP_HIUase
0.8921

4482

hypothetical protein
0.8915

8445

hypothetical protein
0.8909

4565

hypothetical protein
0.8879

10379

hypothetical protein
0.8845

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Signal peptide... cl15763 232.378 1.17E-71 359 - 563 specific 132934
Clp_protease_like superfamily Caseinolytic protease (ClpP) is an ATP-dependent protease; Clp protease (caseinolytic protease;... - 148.457 5.46E-41 92 - 310 superfamily 265774
Clp_protease_like superfamily Caseinolytic protease (ClpP) is an ATP-dependent protease; Clp protease (caseinolytic protease;... - 148.457 5.46E-41 92 - 310 superfamily 265774

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_31877 PHATRDRAFT_31877 156994 252115 Not available Cre10.g444550.t1.2 AT1G73990.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008233 GO:0004252 GO:0004289 GO:0008132 GO:0008243 GO:0008991 GO:0016808 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008233

peptidase activity

Details: 
Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
GO Category: 
MF

GO:0004252

serine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0004289

NA

Details: 
NA
GO Category: 
NA

GO:0008132

NA

Details: 
NA
GO Category: 
NA

GO:0008243

NA

Details: 
NA
GO Category: 
NA

GO:0008991

NA

Details: 
NA
GO Category: 
NA

GO:0016808

NA

Details: 
NA
GO Category: 
NA

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