262207 Trp-synth-beta_II superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262207 chr_4 Trp-synth-beta_II superfamily 1373984 1375477 + Trp-synth-beta_II superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446127 Thaps262207.3, Thaps262207.1, Thaps262207.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0208

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0202
 0.30

Most Highly Correlated Transcripts

31829

CBS_like
0.9399

268844

hypothetical protein
0.9222

261422

(MAP4) MetAP1
0.9214

6243

Macro superfamily
0.9203

16737

Mito_carr
0.9178

268773

Gst
0.9177

14192

PLN02449
0.9131

36037

Trypsin_2
0.9119

5135

Rubis-subs-bind
0.9106

5314

hypothetical protein
0.9076

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Trp-synth-beta_II superfamily Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-... - 295.748 1.62E-96 83 - 453 superfamily 260370

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd877 PHATRDRAFT_bd877 185545 176842 201607 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006520 GO:0003824 GO:0008152 GO:0004794 -

GO:0006520

cellular amino acid metabolic process

Details: 
The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
GO Category: 
BP

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004794

L-threonine ammonia-lyase activity

Details: 
Catalysis of the reaction: L-threonine = 2-oxobutanoate + NH3.
GO Category: 
MF

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