262254 Uup
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262254 chr_4 Uup 1669020 1671723 - Uup

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0067

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0094
 0.37

Most Highly Correlated Transcripts

262977

NA
0.9258

6028

NA
0.9231

9512

PTZ00168
0.9044

21489

Y_phosphatase3
0.8977

30701

PRK05279
0.8972

41005

odpB
0.8944

32216

(RT5) rpsE_bact
0.89

33868

EHD
0.8882

261636

0.8867

4516

hypothetical protein
0.886

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 144.899 4.38E-40 224 - 453 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 144.899 4.38E-40 224 - 453 superfamily 266551
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 144.899 4.38E-40 224 - 453 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 144.899 4.38E-40 224 - 453 superfamily 266551
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 82.6251 8.12E-19 447 - 523 superfamily 257346
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 82.6251 8.12E-19 447 - 523 superfamily 257346
Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction... - 469.038 1.21E-156 237 - 771 multi-dom 223562

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14998 PHATRDRAFT_14998 197602 200235 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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