262540 COG0523Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262540	chr_5	COG0523	1300646	1302685	+	COG0523

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453187	Thaps262540.2, Thaps262540.6, Thaps262540.1, Thaps262540.4, Thaps262540.3, Thaps262540.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0239

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0279	0.39	0.0000044 0.31

Most Highly Correlated Transcripts

4487 hypothetical protein 0.8876	24714 hypothetical protein 0.879	268062 PRK14293 0.878	22770 PLN02908 0.8689	21710 Pho88 superfamily 0.8604	262136 Tim44 superfamily 0.8595
4524 DHQS 0.8552	40200 TRX_reduct 0.8528	39149 PRK05218 0.8519	269710 NADB_Rossmann superfamily 0.8496

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Fer4_NifH superfamily		The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain....	-	131.208	1.07E-35	90 - 304	superfamily	266552
CobW_C		Cobalamin synthesis protein cobW C-terminal domain; CobW proteins are generally found proximal to...	cl08458	94.5862	2.41E-23	348 - 483	specific	214844
CobW_C superfamily		Cobalamin synthesis protein cobW C-terminal domain; This is a large and diverse family of putative...	-	94.5862	2.41E-23	348 - 483	superfamily	263667
COG0523		Putative GTPases (G3E family) [General function prediction only]	-	205.607	4.30E-61	90 - 485	multi-dom	223597

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	149146	241666	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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