263097 GH18_chitinase-like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263097 chr_7 GH18_chitinase-like superfamily 452286 455002 - GH18_chitinase-like superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0258

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0003
 0.47

Most Highly Correlated Transcripts

264577

lysozyme_like superfamily
0.955

269307

hypothetical protein
0.9304

269439

hypothetical protein
0.9221

264576

lysozyme_like superfamily
0.9193

261660

GH18_chitinase-like superfamily
0.9065

263734

LRR_RI superfamily
0.9059

263859

GH18_chitinase-like superfamily
0.9022

32564

KISc
0.8972

5858

hypothetical protein
0.8949

37960

(MYO5) MYSc
0.8866

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GH18_chitinase-like superfamily The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer... - 240.225 5.39E-73 251 - 594 superfamily 263970
Glyco_18 Glyco_18 domain; Glyco_18 domain. - 231.413 1.40E-69 250 - 594 multi-dom 214753

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Amino sugar and nucleotide sugar metabolism map00520

GO Terms

GO:0008152 GO:0016787 GO:0005576 GO:0006030 GO:0008061 GO:0004568 GO:0008843 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016787

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

GO:0006030

chitin metabolic process

Details: 
The chemical reactions and pathways involving chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO Category: 
BP

GO:0008061

chitin binding

Details: 
Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO Category: 
MF

GO:0004568

chitinase activity

Details: 
Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins.
GO Category: 
MF

GO:0008843

endochitinase activity

Details: 
Catalysis of the hydrolysis of nonterminal (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. Typically, endochitinases cleave randomly within the chitin chain.
GO Category: 
MF

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