263734 LRR_RI superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263734	chr_10	LRR_RI superfamily	1022109	1023637	+	LRR_RI superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449340	Thaps263734.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0261

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0009	0.42	0.000093 390000

Most Highly Correlated Transcripts

262527 pi 4-kinase 0.9512	262104 PI-PLCc_GDPD_SF superfamily 0.9498	262826 DUF3608 superfamily 0.949	262645 Glyco_18 0.945	34228 Strumpellin superfamily 0.9433	262171 CAP_ED 0.9426
263859 GH18_chitinase-like superfamily 0.9407	33225 MYSc 0.9351	263191 PLN03076 0.9324	37960 (MYO5) MYSc 0.9313

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LRR_RI superfamily		Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue...	-	108.982	1.34E-26	283 - 434	superfamily	238064

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_42557	PHATRDRAFT_42557	Not available	206232	43368	Not available	Not available	516350

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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