263902 PT_UbiA_HPT1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263902 chr_12 PT_UbiA_HPT1 485856 487319 + PT_UbiA_HPT1

Synonyms

NCBI ID Ensembl Genomes exon ID
7445824 Thaps263902.3, Thaps263902.1, Thaps263902.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0071

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0174
 0.29

Most Highly Correlated Transcripts

bd1645

(bd1645) tpt
0.9664

bd1306

(bd1306) NA
0.9657

bd1403

(bd1403) NA
0.9568

bd1820

(bd1820) Fasciclin
0.9519

bd1342

(bd1342) psaL
0.9505

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9477

bd218

(bd218) Chloroa_b-bind superfamily
0.9387

bd1387

(bd1387) psbE
0.9365

bd1380

(bd1380) ycf39
0.9299

bd1304

(bd1304) Ycf4
0.9289

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PT_UbiA_HPT1 Tocopherol phytyltransferase; Tocopherol polyprenyltransferase (TPT1), also known as homogentisate... cl00337 378.445 5.23E-130 106 - 398 specific 260123
PT_UbiA superfamily UbiA family of prenyltransferases (PTases); Many characterized members of the UbiA... - 378.445 5.23E-130 106 - 398 superfamily 260365

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_2738 PHATRDRAFT_2738 189402 296480 95285 Cre06.g283750.t1.2 AT3G11945.1 Not available

KEGG

KEGG description KEGG Pathway
Ubiquinone and other terpenoid-quinone biosynthesis map00130

GO Terms

GO:0004659 GO:0016021 -

GO:0004659

prenyltransferase activity

Details: 
Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor).
GO Category: 
MF

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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