26403 PLN03233
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26403 chr_13 PLN03233 501351 504116 + PLN03233

Synonyms

NCBI ID Ensembl Genomes exon ID
7446927 Thaps26403.2, Thaps26403.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0229

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0162
 0.37

Most Highly Correlated Transcripts

bd1515

(bd1515) Adenylsuccinate_lyase_2
0.9307

bd1828

(bd1828) NA
0.923

15976

PTZ00348
0.9102

11434

hypothetical protein
0.909

35929

(MAPKKK) S_TKc
0.8927

11666

MIF4G_like superfamily
0.892

263363

ANK
0.8862

34533

AAA_11
0.8854

17292

Spb1_C superfamily
0.8828

14109

SrmB
0.8807

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GST_C_AaRS_like Glutathione S-transferase C-terminal-like, alpha helical domain of various Aminoacyl-tRNA... cl02776 79.279 1.43E-17 172 - 258 specific 198322
GST_C_family superfamily C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione S-transferase... - 79.279 1.43E-17 172 - 258 superfamily 261442
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 365.806 1.45E-120 304 - 613 superfamily 260139
tRNA-synt_1c_C superfamily tRNA synthetases class I (E and Q), anti-codon binding domain; Other tRNA synthetase sub-families... - 124.682 1.65E-32 611 - 781 superfamily 252270
tRNA-synt_1c_C superfamily tRNA synthetases class I (E and Q), anti-codon binding domain; Other tRNA synthetase sub-families... - 124.682 1.65E-32 611 - 781 superfamily 252270
PLN03233 putative glutamate-tRNA ligase; Provisional - 1143.2 0 294 - 814 multi-dom 178772

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 456477 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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