264365 PRK08661
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
264365 chr_16a PRK08661 210493 212896 + PRK08661
NCBI ID Ensembl Genomes exon ID
7442511 Thaps264365.3, Thaps264365.1, Thaps264365.2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0291
Normalized Mean Residue
Thaps_bicluster_0279
0.39
(bd258) HU
0.9053
SNc
0.8787
hypothetical protein
0.875
(bd687) NA
0.8608
(LEU2) IPMI
0.8606
hypothetical protein
0.8578
(bd719) NA
0.8578
hypothetical protein
0.8546
(ALATS2) PLN02900
0.8498
PLN02908
0.8492
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is... cl00268 474.006 3.56E-163 246 - 507 specific 238401
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 474.006 3.56E-163 246 - 507 superfamily 260313
ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea.... cl00266 207.92 3.57E-62 513 - 729 specific 238439
HGTP_anticodon superfamily HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl... - 207.92 3.57E-62 513 - 729 superfamily 260312
YbaK_like superfamily YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the... - 151.517 1.35E-42 21 - 180 superfamily 260143
PRK08661 prolyl-tRNA synthetase; Provisional - 677.625 0 243 - 729 multi-dom 236327
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_23547 PHATRDRAFT_23547 177051 205659 244659 Cre10.g429100.t1.2 AT3G62120.2 557759
KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970
GO:0004812 GO:0005524 GO:0006418 GO:0004827 GO:0006433 GO:0006412 GO:0005737 -

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

proline-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro).
GO Category: 
MF

prolyl-tRNA aminoacylation

Details: 
The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC
Log in to post comments