264833 Lig
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
264833 chr_22 Lig 603075 606495 - Lig
NCBI ID Ensembl Genomes exon ID
7442864 Not available
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0196
Normalized Mean Residue
Thaps_bicluster_0080
0.40
hypothetical protein
0.8641
Smc
0.8636
hypothetical protein
0.8559
(URE) PLN02303
0.8476
(FUM1) PLN00133
0.8425
DUF72
0.8417
KU superfamily
0.8407
S_TKc
0.8397
PI3Kc_like superfamily
0.8365
PLN02889
0.8294
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LIGANc superfamily NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the... - 210.91 2.15E-61 165 - 527 superfamily 261674
DNA_ligase_OB superfamily NAD-dependent DNA ligase OB-fold domain; DNA ligases catalyse the crucial step of joining the... - 102.679 9.40E-26 530 - 601 superfamily 145978
Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] - 497.491 7.02E-164 170 - 922 multi-dom 223350
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49293 PHATRDRAFT_49293 146463 219398 Not available Cre06.g294200.t1.1 Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0005622 GO:0003911 GO:0006260 GO:0006281 -

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

DNA ligase (NAD+) activity

Details: 
Catalysis of the reaction: NAD+ + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + nicotinamide nucleotide + deoxyribonucleotide(n+m).
GO Category: 
MF

DNA replication

Details: 
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO Category: 
BP

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP
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