Thaps_bicluster_0080 Residual: 0.40
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0080 0.40 Thalassiosira pseudonana
Displaying 1 - 33 of 33
10314 COG0429

10314 - COG0429

GO Terms:

GO:0003824

CD Domains:

Go To Gene Page:

10314
10352 hypothetical protein

10352 - hypothetical protein

GO Terms:

GO:0003677

CD Domains:

Go To Gene Page:

10352
11438 hypothetical protein

11438 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11438
11490 hypothetical protein

11490 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11490
11664 DUF3510

11664 - DUF3510

GO Terms:

NA

CD Domains:

Go To Gene Page:

11664
1467 hypothetical protein

1467 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1467
15292 Fumble

15292 - Fumble

GO Terms:

GO:0004594, GO:0005524, GO:0015937

CD Domains:

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15292
1985 hypothetical protein

1985 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1985
20640 (Tp_CCCH11) regulator [Rayko]

20640 - (Tp_CCCH11) regulator [Rayko]

GO Terms:

GO:0003676, GO:0008152, GO:0016491

CD Domains:

Go To Gene Page:

20640
20975 hypothetical protein

20975 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20975
2133 NBD_sugar-kinase_HSP70_actin superfamily

2133 - NBD_sugar-kinase_HSP70_actin superfamily

GO Terms:

GO:0005975

CD Domains:

Go To Gene Page:

2133
22437 CTNNBL superfamily

22437 - CTNNBL superfamily

GO Terms:

NA

CD Domains:

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22437
23573 hypothetical protein

23573 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23573
24683 Raptor_N

24683 - Raptor_N

GO Terms:

NA

CD Domains:

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24683
25162 hypothetical protein

25162 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25162
260866 (ORC2) ORC2 superfamily

260866 - (ORC2) ORC2 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

260866
262103 C2_PLC_like

262103 - C2_PLC_like

GO Terms:

GO:0004435, GO:0006629, GO:0007165, GO:0007242

CD Domains:

Go To Gene Page:

262103
263010 KU superfamily

263010 - KU superfamily

GO Terms:

GO:0003677, GO:0004003, GO:0006303

CD Domains:

Go To Gene Page:

263010
263327 MFS_1

263327 - MFS_1

GO Terms:

NA

CD Domains:

Go To Gene Page:

263327
263562 ECM4

263562 - ECM4

GO Terms:

NA

CD Domains:

Go To Gene Page:

263562
264833 Lig

264833 - Lig

GO Terms:

GO:0005622, GO:0003911, GO:0006260, GO:0006281

CD Domains:

Go To Gene Page:

264833
269863 PepO

269863 - PepO

GO Terms:

GO:0004245, GO:0006508, GO:0016020, GO:0008237, GO:0008270, GO:0016512

CD Domains:

Go To Gene Page:

269863
270359 hypothetical protein

270359 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

270359
30310 Aldo_ket_red

30310 - Aldo_ket_red

GO Terms:

GO:0016491, GO:0000252, GO:0000253, GO:0004448, GO:0004495, GO:0008875, GO:0016229, GO:0016616, GO:0018451, GO:0018452, GO:0018453, GO:0048258

CD Domains:

Go To Gene Page:

30310
32230 (MAPK) STKc_MAPK

32230 - (MAPK) STKc_MAPK

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674, GO:0004682, GO:0004691, GO:0005952, GO:0005956, GO:0008603, GO:0008605

CD Domains:

Go To Gene Page:

32230
36582 Cullin

36582 - Cullin

GO Terms:

GO:0007049

CD Domains:

Go To Gene Page:

36582
5393 hypothetical protein

5393 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5393
6299 Thr-dehyd

6299 - Thr-dehyd

GO Terms:

GO:0003824, GO:0008152, GO:0016855

CD Domains:

Go To Gene Page:

6299
6458 Ssu72 superfamily

6458 - Ssu72 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

6458
6950 prc

6950 - prc

GO Terms:

GO:0005515, GO:0006508, GO:0008236

CD Domains:

Go To Gene Page:

6950
7939 hypothetical protein

7939 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7939
8334 hypothetical protein

8334 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8334
9026 Phytochelatin superfamily

9026 - Phytochelatin superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

9026
GO ID Go Term p-value q-value Cluster
GO:0015937 coenzyme A biosynthesis 0.00289436 1 Thaps_bicluster_0080
GO:0006303 double-strand break repair via nonhomologous end-joining 0.00289436 1 Thaps_bicluster_0080
GO:0007049 cell cycle 0.0200978 1 Thaps_bicluster_0080
GO:0006629 lipid metabolism 0.080847 1 Thaps_bicluster_0080
GO:0006260 DNA replication 0.0967972 1 Thaps_bicluster_0080
GO:0007165 signal transduction 0.109892 1 Thaps_bicluster_0080
GO:0007242 intracellular signaling cascade 0.115081 1 Thaps_bicluster_0080
GO:0006281 DNA repair 0.125374 1 Thaps_bicluster_0080
GO:0005975 carbohydrate metabolism 0.196738 1 Thaps_bicluster_0080
GO:0006508 proteolysis and peptidolysis 0.201185 1 Thaps_bicluster_0080
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