264891 Glyco_hydro_30 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264891 chr_23 Glyco_hydro_30 superfamily 113364 116262 - Glyco_hydro_30 superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0383

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0146
 0.45

Most Highly Correlated Transcripts

269160

(gltD) GltD
0.8687

22651

hypothetical protein
0.8563

263327

MFS_1
0.8506

20641

hypothetical protein
0.8431

264005

Glyco_hydrolase_16 superfamily
0.8418

264537

Aa_trans superfamily
0.841

11165

hypothetical protein
0.8355

26192

(GDH_2) PTZ00079
0.8352

11575

hypothetical protein
0.8281

22565

UhpC
0.8252

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Glyco_hydro_30 superfamily O-Glycosyl hydrolase family 30; O-Glycosyl hydrolase family 30. - 257.951 1.15E-76 145 - 519 superfamily 110998

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54536 PHATRDRAFT_54536 156475 318656 61724 Not available Not available 261090

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004348 GO:0005764 GO:0006665 GO:0007040 -

GO:0004348

glucosylceramidase activity

Details: 
Catalysis of the reaction: D-glucosyl-N-acylsphingosine + H2O = D-glucose + N-acylsphingosine.
GO Category: 
MF

GO:0005764

lysosome

Details: 
A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
GO Category: 
CC

GO:0006665

sphingolipid metabolic process

Details: 
The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid).
GO Category: 
BP

GO:0007040

lysosome organization

Details: 
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases.
GO Category: 
BP

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