267922 proteasome_beta_type_1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
267922 chr_1 proteasome_beta_type_1 56948 58104 - proteasome_beta_type_1

Synonyms

NCBI ID Ensembl Genomes exon ID
7451528 Thaps267922.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0040
 0.39

Most Highly Correlated Transcripts

11068

(PSA6) proteasome_alpha_type_6
0.8674

264377

(PSB7) proteasome_beta_type_7
0.8541

4318

TIM21 superfamily
0.8437

33649

(PSB6) proteasome_beta_type_6
0.8392

30075

(PSA5) proteasome_alpha_type_5
0.8268

26868

(PSA3) proteasome_alpha_type_3
0.8179

40483

(PSA4) Ntn_hydrolase superfamily
0.817

40962

(RPN8) PLN03246
0.81

261400

NA
0.8098

24560

PDI_a_family
0.805

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the... cl00467 328.834 1.28E-113 70 - 280 specific 239726
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 328.834 1.28E-113 70 - 280 superfamily 260443
PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover,... - 130.881 2.14E-36 67 - 270 multi-dom 223711

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd611 PHATRDRAFT_bd611 270583 215785 446067 Cre26.g756797.t1.1 AT3G60820.3 286698

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004175 GO:0005839 GO:0006511 GO:0004298 GO:0004299 -

GO:0004175

endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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