268404 (Lig1) dnl1
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
268404 chr_2 (Lig1) dnl1 2653414 2657163 + dnl1
Expression Profile Conditional Changes Cluster Dendrogram
Normalized Mean Residue
(bd718) PRK10387
(bd624) Glyco_transf_34 superfamily
(bd1161) NA
(bd1306) NA
(bd218) Chloroa_b-bind superfamily
(bd668) NA
(bd843) NA
(bd439) POLBc_alpha
Cupin_8 superfamily
(bd1160) Chloroa_b-bind superfamily
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Adenylation_DNA_ligase_I_Euk Adenylation domain of eukaryotic DNA Ligase I; ATP-dependent polynucleotide ligases catalyze... cl12015 382.674 1.90E-129 243 - 465 specific 185710
Adenylation_DNA_ligase_like superfamily Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases; ATP-dependent... - 382.674 1.90E-129 243 - 465 superfamily 264509
OBF_DNA_ligase_I The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA... cl08424 265.494 3.30E-85 470 - 616 specific 153438
OBF_DNA_ligase_family superfamily The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part... - 265.494 3.30E-85 470 - 616 superfamily 263645
DNA_ligase_A_N superfamily DNA ligase N terminus; This region is found in many but not all ATP-dependent DNA ligase enzymes (... - 145.834 1.16E-40 1 - 158 superfamily 252736
DNA_ligase_A_N superfamily DNA ligase N terminus; This region is found in many but not all ATP-dependent DNA ligase enzymes (... - 145.834 1.16E-40 1 - 158 superfamily 252736
dnl1 DNA ligase I, ATP-dependent (dnl1); All proteins in this family with known functions are ATP-... - 467.563 3.40E-158 38 - 614 multi-dom 233029
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_51005 PHATR_51005 229877 188840 420219 Cre07.g325716.t1.1 AT1G08130.1 532805
KEGG description KEGG Pathway
Mismatch repair map03430
GO:0003910 GO:0005524 GO:0006260 GO:0006281 GO:0006310 -

DNA ligase (ATP) activity

Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m).
GO Category: 

ATP binding

Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 

DNA replication

The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO Category: 

DNA repair

The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 

DNA recombination

Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
GO Category: 
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