268480 (GGPS1) Trans_IPPS_HT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268480 chr_3 (GGPS1) Trans_IPPS_HT 1037252 1038699 + Trans_IPPS_HT

Synonyms

NCBI ID Ensembl Genomes exon ID
7448761 Thaps268480.2, Thaps268480.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0024

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0260
 0.25

Most Highly Correlated Transcripts

261608

PLN02585
0.972

9021

(PbgD) hemC
0.9485

31012

(Cpx1) PLN02873
0.9401

263658

GUN4
0.933

5240

ALAD_PBGS_aspartate_rich
0.9226

37534

MRP-like
0.9204

269147

NAD_binding_8 superfamily
0.9201

32201

Cob-chelat-sub
0.9165

3974

(UroD2) URO-D
0.9138

261232

URO-D
0.9122

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail; These trans-Isoprenyl Diphosphate Synthases (... cl00210 270.576 3.82E-89 74 - 337 specific 173833
Isoprenoid_Biosyn_C1 superfamily Isoprenoid Biosynthesis enzymes, Class 1; Superfamily of trans-isoprenyl diphosphate synthases (... - 270.576 3.82E-89 74 - 337 superfamily 260263

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19000 PHATRDRAFT_19000 169888 62475 443289 Cre12.g484200.t1.2 AT2G18620.1 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0008299 -

GO:0008299

isoprenoid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
GO Category: 
BP

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