574 PRK05444
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
574 chr_7 PRK05444 618491 620856 + PRK05444

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps574.1, Thaps574.3, Thaps574.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0014

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0160
 0.28

Most Highly Correlated Transcripts

270312

hypothetical protein
0.9982

36235

p450 superfamily
0.9604

270321

hypothetical protein
0.9573

bd1474

(bd1474) phytoene_desat
0.9503

2484

hypothetical protein
0.9491

bd1078

(bd1078) NA
0.9465

268592

VDE superfamily
0.9461

bd1820

(bd1820) Fasciclin
0.9405

4531

PKc_like superfamily
0.9404

4370

hypothetical protein
0.9385

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-... cl01629 319.877 1.78E-104 92 - 347 specific 238965
TPP_enzymes superfamily Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes... - 319.877 1.78E-104 92 - 347 superfamily 261022
TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK... cl11410 235.029 8.12E-73 383 - 537 specific 132916
TPP_enzyme_PYR superfamily Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes; Thiamine... - 235.029 8.12E-73 383 - 537 superfamily 264357
Transketolase_C superfamily Transketolase, C-terminal domain; The C-terminal domain of transketolase has been proposed as a... - 88.427 1.64E-20 577 - 696 superfamily 251527
Transketolase_C superfamily Transketolase, C-terminal domain; The C-terminal domain of transketolase has been proposed as a... - 88.427 1.64E-20 577 - 696 superfamily 251527
PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional - 901.372 0 54 - 703 multi-dom 235470

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd1689 PHATRDRAFT_bd1689 266209 65889 440786 Cre07.g356350.t1.1 AT3G21500.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008661 GO:0016114 GO:0005215 GO:0006810 GO:0016020 -

GO:0008661

1-deoxy-D-xylulose-5-phosphate synthase activity

Details: 
Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2).
GO Category: 
MF

GO:0016114

terpenoid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.
GO Category: 
BP

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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