30385 (Lhcx6_1) Chloroa_b-bind superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
30385	chr_18	(Lhcx6_1) Chloroa_b-bind superfamily	408530	409464	-	Chloroa_b-bind superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444279	Thaps30385.1, Thaps30385.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0022

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0218	0.15	610 9100

Most Highly Correlated Transcripts

bd1820 (bd1820) Fasciclin 0.989	bd1160 (bd1160) Chloroa_b-bind superfamily 0.988	270222 0.9835	26246 (Lhcr3) fucoxanthin chl a/c light-harvesting protein 0.9802	24769 hypothetical protein 0.9793	270241 (Lhcf11) fucoxanthin-chlorophyll a-c binding protein, plastid precursor 0.9785
24080 (Lhcr1) fucoxanthin chl a/c light-harvesting protein, lhcr type 0.978	bd218 (bd218) Chloroa_b-bind superfamily 0.9776	20603 hypothetical protein 0.9773	21667 (Lhcf7) fucoxanthin chlorophyll a/c light-harvesting protein, major type 0.977

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Chloroa_b-bind superfamily		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	-	98.6617	1.64E-25	1 - 188	superfamily	261492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009765 GO:0016020 -

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