30915 prmAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
30915	chr_1	prmA	1962413	1963075	+	prmA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443154	Thaps30915.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0241

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0066	0.42	13 340

Most Highly Correlated Transcripts

268062 PRK14293 0.8801	8157 hypothetical protein 0.859	42213 PLN02286 0.8494	23393 hypothetical protein 0.8466	29232 PLN02502 0.8453	21519 hypothetical protein 0.8448
18796 UMP_CMP_kin_fam 0.844	4524 DHQS 0.8404	3588 hypothetical protein 0.8401	1888 hypothetical protein 0.8361

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
prmA		ribosomal protein L11 methyltransferase; Reviewed	-	113.323	2.23E-30	3 - 203	multi-dom	234786

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_44159	PHATR_44159	Not available	Not available	448133	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0008757 -

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