30939 S1_IF1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
30939	chr_1	S1_IF1	1348417	1348872	+	S1_IF1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451453	Thaps30939.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0043

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0088	0.37	20 7100

Most Highly Correlated Transcripts

33161 prfA 0.8944	269764 RluA 0.8887	39941 PRK13357 0.8655	263147 (lipB_2) BPL_LplA_LipB superfamily 0.8604	268062 PRK14293 0.8593	38964 Chorismate_synthase 0.8593
511 (GBP1) PRK09601 0.8579	9976 hypothetical protein 0.8562	25040 NA 0.8556	5656 DUF1823 superfamily 0.8552

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
S1_IF1		S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-...	cl09927	100.673	2.54E-28	82 - 149	specific	239898
S1_like superfamily		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	-	100.673	2.54E-28	82 - 149	superfamily	263921

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_11934	PHATRDRAFT_11934	273283	310333	Not available	Cre04.g218700.t1.2	AT4G11175.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003743 GO:0006413 GO:0003723 -

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