31242 PtrB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31242 chr_1 PtrB 838754 841339 + PtrB

Synonyms

NCBI ID Ensembl Genomes exon ID
7453467 Thaps31242.1, Thaps31242.3, Thaps31242.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0266

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0037
 0.54

Most Highly Correlated Transcripts

268443

SAICAR_synt_Sc
0.9013

268010

(RPC2) PRK08565
0.888

4574

hypothetical protein
0.871

264065

(cobA) PLN02625
0.8614

261719

AdoMet_MTases superfamily
0.8571

13308

PLN02948
0.8531

31259

HA
0.8524

6953

PRK11713
0.8513

36007

Aldolase_II superfamily
0.8488

bd392

(bd392) DEXDc
0.8487

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_S9 Prolyl oligopeptidase family; Prolyl oligopeptidase family. cl19144 200.522 3.51E-59 567 - 796 specific 249771
Peptidase_S9 superfamily Prolyl oligopeptidase family; Prolyl oligopeptidase family. - 200.522 3.51E-59 567 - 796 superfamily 267497
PtrB Protease II [Amino acid transport and metabolism] - 580.792 0 109 - 798 multi-dom 224684

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 178812 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008236 GO:0004287 GO:0004252 GO:0008945 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008236

serine-type peptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0004287

NA

Details: 
NA
GO Category: 
NA

GO:0004252

serine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0008945

NA

Details: 
NA
GO Category: 
NA

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