31979 ENDO3c
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31979 chr_2 ENDO3c 1970530 1971654 + ENDO3c

Synonyms

NCBI ID Ensembl Genomes exon ID
7452485 Thaps31979.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0403

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0059
 0.44

Most Highly Correlated Transcripts

10474

hypothetical protein
0.9282

3310

hypothetical protein
0.9124

5582

hypothetical protein
0.9121

5977

hypothetical protein
0.907

5921

hypothetical protein
0.9034

6532

Eapp_C superfamily
0.9032

4565

hypothetical protein
0.9015

4482

hypothetical protein
0.8982

25509

hypothetical protein
0.8982

8510

hypothetical protein
0.8975

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase... cl19066 113.105 5.21E-30 115 - 279 specific 238013
ENDO3c superfamily endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase... - 113.105 5.21E-30 115 - 279 superfamily 267419

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 161186 121548 50013 Not available AT3G47830.1 Not available

KEGG

KEGG description KEGG Pathway
Base excision repair map03410

GO Terms

GO:0006284 -

GO:0006284

base-excision repair

Details: 
In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
GO Category: 
BP

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