32661 ABC_ATPase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32661 chr_3 ABC_ATPase superfamily 1414416 1415621 - ABC_ATPase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451281 Thaps32661.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0082

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0134
 0.26

Most Highly Correlated Transcripts

bd439

(bd439) POLBc_alpha
0.9681

bd1983

(bd1983) RecA-like_NTPases superfamily
0.9426

11186

hypothetical protein
0.9424

8536

CDC6
0.9419

7206

hypothetical protein
0.9379

269422

wd-40 repeat-containing protein
0.9354

bd1081

(bd1081) NA
0.9343

bd1173

(bd1173) S_TKc
0.933

5867

CDC6
0.9325

2267

hypothetical protein
0.932

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 361.309 2.85E-124 116 - 335 superfamily 266551

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
268143 PHATRDRAFT_19604 PHATRDRAFT_19604 157228 153636 451702 Cre01.g003463.t1.1 AT3G18524.1 261139

KEGG

KEGG description KEGG Pathway
Mismatch repair map03430

GO Terms

GO:0003684 GO:0005524 GO:0006298 -

GO:0003684

damaged DNA binding

Details: 
Interacting selectively and non-covalently with damaged DNA.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006298

mismatch repair

Details: 
A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO Category: 
BP

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