32971 Tryp_SPc superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
32971	chr_3	Tryp_SPc superfamily	449158	449478	+	Tryp_SPc superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444031	Thaps32971.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0403

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0018	0.42

Most Highly Correlated Transcripts

261172 (ADH2) MDR superfamily 0.9062	9115 DnaJ 0.9054	3348 hypothetical protein 0.8981	1684 Ion_trans_2 0.8965	30701 PRK05279 0.8961	264337 hypothetical protein 0.893
4143 hypothetical protein 0.8895	23991 (Tp_HSF_2.5g) HSF_DNA-bind superfamily 0.8821	25505 hypothetical protein 0.881	11563 hypothetical protein 0.8756

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	56.901	2.33E-11	11 - 58	superfamily	238113

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments