33985 PseudoU_synth_PUS1_PUS2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33985 chr_4 PseudoU_synth_PUS1_PUS2 1294224 1296218 - PseudoU_synth_PUS1_PUS2

Synonyms

NCBI ID Ensembl Genomes exon ID
7448794 Thaps33985.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0226

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0234
 0.27

Most Highly Correlated Transcripts

24217

hypothetical protein
0.9088

24709

(NTT6) TLC superfamily
0.9065

5540

hypothetical protein
0.906

34596

WD40
0.9005

21110

Sun
0.8999

32996

(Tp_CCCH4) DUS_like_FMN
0.8978

23679

Diphthamide_syn superfamily
0.8965

3858

PTZ00141
0.8908

263872

PRK14329
0.8902

35207

YihA_EngB
0.8898

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_PUS1_PUS2 Pseudouridine synthase, PUS1/ PUS2 like; This group consists of eukaryotic pseudouridine synthases... cl00130 240.978 3.25E-74 265 - 570 specific 211335
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 240.978 3.25E-74 265 - 570 superfamily 260207
TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis] - 169.755 7.10E-48 261 - 582 multi-dom 223179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_3578 PHATR_3578 183793 204461 Not available Cre03.g152950.t1.1 AT1G20370.1 308307

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004730 GO:0008033 GO:0009982 GO:0016439 -

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

GO:0008033

tRNA processing

Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0016439

NA

Details: 
NA
GO Category: 
NA

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