34498 VTC1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
34498	chr_5	VTC1	1534172	1536396	+	VTC1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445168	Thaps34498.2, Thaps34498.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0102

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0181	0.40	44000 0.00011

Most Highly Correlated Transcripts

4108 hypothetical protein 0.8955	5026 F1-ATPase_gamma 0.8922	263489 WD40 0.8837	262856 Tryp_SPc 0.8832	19662 hypothetical protein 0.8798	24864 hypothetical protein 0.8772
5584 P4Hc 0.8747	262671 hypothetical protein 0.8725	32760 PDEase_I 0.8712	19764 MPC superfamily 0.87

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
VTC1		Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]	cl09954	115.937	2.56E-32	108 - 243	specific	227589
DUF202 superfamily		Domain of unknown function (DUF202); This family consists of hypothetical proteins some of which...	-	115.937	2.56E-32	108 - 243	superfamily	263935

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	181535	202089	Not available	Cre12.g510250.t1.2	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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