34771 (MTF1) PLN02285
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
34771 chr_6 (MTF1) PLN02285 1505645 1507055 - PLN02285
NCBI ID Ensembl Genomes exon ID
7442748 Thaps34771.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0052
Normalized Mean Residue
Thaps_bicluster_0066
0.42
(bd719) NA
0.9398
(bd1221) recQ_fam
0.9142
cpn10
0.9133
(bd1160) Chloroa_b-bind superfamily
0.9077
(bd1820) Fasciclin
0.9041
(bd258) HU
0.9031
(bd1765) NA
0.8921
(bd624) Glyco_transf_34 superfamily
0.8882
(bd218) Chloroa_b-bind superfamily
0.8882
(bd1863) NA
0.8877
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FMT_core_Met-tRNA-FMT_N Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Methionyl-tRNA formyltransferase (... cl00395 270.854 3.02E-88 136 - 349 specific 187715
FMT_core superfamily Formyltransferase, catalytic core domain; Formyltransferase, catalytic core domain. The proteins of... - 270.854 3.02E-88 136 - 349 superfamily 260403
Met_tRNA_FMT_C C-terminal domain of Formyltransferase and other enzymes; C-terminal domain of formyl transferase... cl14785 76.0306 6.02E-17 352 - 448 specific 187732
FMT_C_like superfamily Carboxy-terminal domain of Formyltransferase and similar domains; This family represents the C-... - 76.0306 6.02E-17 352 - 448 superfamily 265452
PLN02285 methionyl-tRNA formyltransferase - 532.347 0 133 - 460 multi-dom 215159
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14917 PHATRDRAFT_14917 140441 148471 68433 Cre12.g560550.t1.1 AT1G66520.1 565252
KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970
GO:0003910 GO:0005524 GO:0006260 GO:0006281 GO:0006310 GO:0009058 GO:0016742 GO:0004479 -

DNA ligase (ATP) activity

Details: 
Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m).
GO Category: 
MF

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

DNA replication

Details: 
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO Category: 
BP

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

DNA recombination

Details: 
Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
GO Category: 
BP

biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO Category: 
BP

hydroxymethyl-, formyl- and related transferase activity

Details: 
Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor).
GO Category: 
MF

methionyl-tRNA formyltransferase activity

Details: 
Catalysis of the reaction: 10-formyltetrahydrofolate + L-methionyl-tRNA + H2O = tetrahydrofolate + N-formylmethionyl-tRNA.
GO Category: 
MF
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