34959 DUS_like_FMN
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34959 chr_6 DUS_like_FMN 1724739 1725884 - DUS_like_FMN

Synonyms

NCBI ID Ensembl Genomes exon ID
7446321 Thaps34959.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0224

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0276
 0.21

Most Highly Correlated Transcripts

269776

Ribosomal_L1
0.9444

31465

Brix
0.9419

21725

Brix superfamily
0.9393

34221

DEXDc superfamily
0.9388

22203

(Tp_CCHH28) zf-C2H2_2
0.9346

32807

DEADc
0.9305

40509

(RL30) Ribosomal_L24e_L24
0.9279

20658

Nop53
0.9261

31415

hypothetical protein
0.9194

39953

SrmB
0.9155

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the... cl17186 267.823 6.67E-88 1 - 229 specific 239200
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 267.823 6.67E-88 1 - 229 superfamily 266538
PRK10415 tRNA-dihydrouridine synthase B; Provisional - 90.0302 1.14E-20 1 - 315 multi-dom 182440

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_3015 PHATRDRAFT_3015 183462 194159 437651 Cre12.g486900.t1.2 AT5G67220.1 289018

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008033 GO:0016491 GO:0050660 GO:0051341 -

GO:0008033

tRNA processing

Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0050660

flavin adenine dinucleotide binding

Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO Category: 
MF

GO:0051341

regulation of oxidoreductase activity

Details: 
Any process that modulates the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
BP

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