35095 TPR
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35095 chr_6 TPR 639557 641995 + TPR

Synonyms

NCBI ID Ensembl Genomes exon ID
7448591 Thaps35095.3, Thaps35095.2, Thaps35095.4, Thaps35095.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0298

Most Highly Correlated Transcripts

26743

IF-2B
0.9029

263072

PcnB
0.891

12836

EEP superfamily
0.89

12899

AAA
0.8837

38258

ATM1
0.8814

6459

Spc97_Spc98
0.881

21700

hypothetical protein
0.879

23269

hypothetical protein
0.8768

21922

hypothetical protein
0.875

6012

hypothetical protein
0.8738

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 63.168 6.56E-12 545 - 643 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 63.168 6.56E-12 545 - 643 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 63.168 6.56E-12 545 - 643 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 63.168 6.56E-12 545 - 643 superfamily 238112
APC8 superfamily Anaphase promoting complex subunit 8 / Cdc23; The anaphase-promoting complex is composed of eight... - 88.1236 2.65E-20 134 - 273 superfamily 252336

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_38886 PHATRDRAFT_38886 137205 258292 456815 Cre16.g681578.t1.1 AT3G48150.1 566567

KEGG

KEGG description KEGG Pathway
Ubiquitin mediated proteolysis map04120

GO Terms

Not available -

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