35531 SET
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35531 chr_7 SET 1760295 1763601 - SET

Synonyms

NCBI ID Ensembl Genomes exon ID
7450592 Thaps35531.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0414

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0187
 0.36

Most Highly Correlated Transcripts

1568

SRPBCC superfamily
0.8942

10487

hypothetical protein
0.8887

36007

Aldolase_II superfamily
0.8833

6997

hypothetical protein
0.8829

39592

(NRT3) 2A0108
0.8814

22124

(Tp_HSF_1.2a) HSF_DNA-bind
0.8806

11563

hypothetical protein
0.8793

10510

hypothetical protein
0.8786

260856

NBD_sugar-kinase_HSP70_actin superfamily
0.8782

37609

PKc_like superfamily
0.8744

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone... cl02556 80.109 1.53E-17 618 - 698 specific 99922
Bromodomain superfamily Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone... - 80.109 1.53E-17 618 - 698 superfamily 261339
SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on... cl02566 117.05 5.04E-30 948 - 1065 specific 214614
SET superfamily SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be... - 117.05 5.04E-30 948 - 1065 superfamily 261347
COG2940 Proteins containing SET domain [General function prediction only] - 112.995 2.34E-26 810 - 1086 multi-dom 225491

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_6915 PHATRDRAFT_6915 189660 247729 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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