36337 Vps35 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
36337	chr_10	Vps35 superfamily	300592	303932	+	Vps35 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451070	Thaps36337.1, Thaps36337.4, Thaps36337.3, Thaps36337.2, Thaps36337.6, Thaps36337.7, Thaps36337.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0395

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0264	0.37	110 5800

Most Highly Correlated Transcripts

12836 EEP superfamily 0.9138	21893 CysPc 0.9103	24063 COG3899 0.9093	25619 hypothetical protein 0.9046	22549 hypothetical protein 0.903	262157 E1_like_apg7 0.9021
24683 Raptor_N 0.9015	6558 hypothetical protein 0.8928	9364 hypothetical protein 0.8921	263599 COG3899 0.8911

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Vps35 superfamily		Vacuolar protein sorting-associated protein 35; Vacuolar protein sorting-associated protein (Vps)...	-	658.947	0	1 - 734	superfamily	252074

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
39677	PHATR_43830	PHATR_43830	213025	325242	467601	Cre01.g029650.t1.1	AT1G75850.1	547810

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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